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dc.contributor.advisorWorsham, Maria
dc.contributor.authorGothard, Alexandra L.
dc.date.accessioned2015-09-12T14:27:33Z
dc.date.available2015-09-12T14:27:33Z
dc.date.issued2014
dc.identifier.urihttp://hdl.handle.net/10920/29957
dc.descriptionviii, 46 p.en_US
dc.description.abstractHead and neck cancer, specifically Squamous cell carcinoma (HNSCC), is one of the leading cancers in the United States and contributes greatly to the mortality count each year. Human Papillomavirus (HPV) has been confirmed to be an independent risk factor of HSNCC. HPV positive HNSCC (HPV+HNSCC) has a distinct etiological profile, and a prognostic advantage compared to that of HPV negative HNSCC (HPV-HNSCC). Epigenetic alterations, specifically DNA promoter methylation at Cytosine-phosphate-Guanine (CpG) sites, are thought to play a role in the differences between these two subtypes of HNSCC. This study’s objective was to examine the methylation status of 11 genes previously determined by Lechner et al., 2012 as significantly differentially methylated between HPV+HNSCC and HPV-HNSCC tumor samples in an independent cohort, and to assess whether their methylation status (hypermethylated versus hypomethylated) and corresponding micro RNA (mRNA) expression levels indicated concordance (agreement) for potential translation to the clinic setting. Global methylation profiling of 4 HPV+HNSCC and 4 HPV-HNSCC confirmed significant differential methylation for 7 of the 11 genes. Statistically significant differential expression for 7 of the 11 genes was noted in HPV-HNSCC versus Normal and for 6 of the 11 genes in HPV+HNSCC versus Normal samples. In the HPV+HNSCC versus the HPV-HNSCC group, none of the 11 genes showed statistically differential gene expression, though trends of directionality (agreement with methylation status) were observed. There was no significant correlation between gene methylation and expression for the 12 samples in the 450K cohort (4 HPV+HNSCC, 4 HPV-HNSCC, 4 Normal). Despite lack of correlation between methylation and gene expression, the significant differential methylation of 7 genes indicates noteworthy independent confirmation of Lechner’s findings. Also, genes CRMP1, MEI1, PCDH10, and PCDHB11 were commonly differentially expressed with similar directionality of expression (high) between HPV+HNSCC and Normal, and HPV-HNSCC and Normal samples, and favors implication of these genes in the pathogenesis of HNSCC regardless of HPV status. The latter suggests a basis for continued study of the relationship between the methylation and gene expression levels of these 11 genes in HNSCC. Ideally, some of these genes may have the potential to become not only biomarkers for HNSCC, but also biomarkers that differentiate HPV+HNSCC from HPV-HNSCC.en_US
dc.format.mimetypeapplication/pdf
dc.language.isoen_USen_US
dc.publisherKalamazoo Collegeen_US
dc.relation.ispartofKalamazoo College Chemistry Senior Individualized Projects Collection
dc.rightsU.S. copyright laws protect this material. Commercial use or distribution of this material is not permitted without prior written permission of the copyright holder. All rights reserved.
dc.titleIndependent Validation of Differential DNA Methylation and Gene Expression in HPV-associated Head and Neck Squamous cell carcinoma (HNSCC)en_US
dc.typeThesisen_US
KCollege.Access.ContactIf you are not a current Kalamazoo College student, faculty, or staff member, email dspace@kzoo.edu to request access to this thesis.


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  • Chemistry Senior Individualized Projects [889]
    This collection includes Senior Individualized Projects (SIP's) completed in the Chemistry Department. Abstracts are generally available to the public, but PDF files are available only to current Kalamazoo College students, faculty, and staff.

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