Show simple item record

dc.contributor.advisorBerger, Ann E.
dc.contributor.authorHooker, Gillian W.
dc.date.accessioned2011-10-14T13:17:43Z
dc.date.available2011-10-14T13:17:43Z
dc.date.issued1999
dc.identifier.urihttp://hdl.handle.net/10920/23613
dc.descriptionvi, 58 p.en_US
dc.description.abstractThe Saccharomyces cerevisiae Cell Integrity (Cl) pathway is a Mitogen Activated Protein (MAP) kinase pathway involved in cellular response to changes in environment and in cell cycle regulation. Responses generated by the CI pathway are not completely understood. Genome-wide gene expression in mutants of two genes in the pathway, the MAP kinase SIt2 and the transcription factor RIm 1, activated by Slt2, was examined to identify additional genes controlled by the pathway. Gene expression in mutants was compared to that in wild-type strains at 24º and after a 45 minute, 37º heat shock. Labeled mRNA was hybridized to Affymetrix S.cerevisiae oligonucleotide microarrays. Clustering was used to identify groups of genes regulated together, and additional computational tools were used to find known and unknown upstream regulatory regions. Expression of 116 genes was affected by the slt2 mutation. Of these genes, 37 had computer-identified regulatory regions for SBF, a second Slt2-regulated transcription factor, and 15 had Rlml regulatory regions. Expression of 57 genes was affected by the rim 1 mutation, 11 of which had SBF regions and 13 of which had RIm 1 regions. Thus, genes with predicted binding regions are indeed regulated by the pathway. That genes affected by these mutations lacked both SBF and Rlm 1 sites indicated the possible existence of an additional transcription factor. Searches for recurring sequence motifs in these genes identified new potential regulatory regions. Many genes in all regulated sets are involved in cell wall integrity, as expected for targets of the CI pathway. Investigation of non-cell wall genes may elucidate other aspects of the response and provide clues about similar response mechanisms in higher eukaryotic organisms.en_US
dc.description.abstractWith honors.
dc.description.sponsorshipGenomics and Research. Pharmacia and Upjohn, Inc. Kalamazoo, Michigan.
dc.format.mimetypeapplication/pdf
dc.language.isoen_USen_US
dc.publisherKalamazoo Collegeen_US
dc.relation.ispartofKalamazoo College Biology Senior Individualized Projects Collection
dc.relation.ispartofseriesSenior Individualized Projects. Biology;
dc.rightsU.S. copyright laws protect this material. Commercial use or distribution of this material is not permitted without prior written permission of the copyright holder.
dc.titleThe Identification of Downstream Targets of the Cell Integrity Pathway in Saccharomyces cerevisiae by Oligonucleotide Microarray Analysisen_US
dc.typeThesisen_US
KCollege.Access.ContactIf you are not a current Kalamazoo College student, faculty, or staff member, email dspace@kzoo.edu to request access to this thesis.


Files in this item

Thumbnail

This item appears in the following Collection(s)

  • Biology Senior Individualized Projects [1489]
    This collection includes Senior Individualized Projects (SIP's) completed in the Biology Department. Abstracts are generally available to the public, but PDF files are available only to current Kalamazoo College students, faculty, and staff.

Show simple item record